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HLA Gene Typing

Molecular typing of human leukocyte antigen (HLA) genes for the diagnosis of autoimmune diseases, donor selection in transplantation, and assessment of immune response risks.

HLA (Human Leukocyte Antigens)

Histocompatibility antigens (HLA – Human Leukocyte Antigen) play a key role in the immune system, determining how each person’s body recognizes and eliminates pathogenic agents.

HLA genes encode major histocompatibility complex (MHC) proteins that are displayed on the cell surface and present antigens to immune cells, triggering an immune response.

Genetic variability of HLA underlies individual differences in immune reactions, which determines:

  • The likelihood of developing autoimmune diseases;
  • Susceptibility to infectious diseases;
  • Success of organ and tissue transplantation.

HLA system genes are considered among the most important risk factors for the development of certain autoimmune diseases.

Two main classes of HLA genes are distinguished:

  • Class I (HLA-A, HLA-B, HLA-C) – expressed on all nucleated cells. MHC I presents intracellular antigens (for example, fragments of viral and tumor proteins) on the cell surface, thereby helping the immune system distinguish “self” cells from “non-self.”
  • Class II (HLA-DQ, HLA-DR, HLA-DP) – expressed on antigen-presenting cells (macrophages, dendritic cells, B lymphocytes). MHC II presents peptides derived from pathogens or foreign cells after phagocytosis. MHC II initiates the adaptive immune response, participates in humoral immunity, and regulates autoimmune processes.

Why HLA Typing Is Performed


HLA typing identifies an individual’s HLA allele variants. This information is clinically useful in several areas:

  • Transplantation. Matching donor and recipient HLA profiles is a critical factor for successful organ and tissue transplantation. The greater the concordance of HLA alleles, the lower the risk of graft-versus-host disease and graft rejection.
  • Autoimmune diseases. Certain HLA alleles are associated with predisposition to autoimmune diseases. Established associations include: HLA-B27 – ankylosing spondylitis (Bechterew’s disease); HLA-DR4 – rheumatoid arthritis; HLA-DQ2/DQ8 – celiac disease; HLA-DR3/DR4 – type 1 diabetes mellitus. Autoimmune disturbances, even in the absence of clinical manifestations, can lead to reproductive disorders at various stages.
  • Reproductive medicine. HLA typing is recommended in cases of recurrent pregnancy loss, since allele matching between partners may result in insufficient antigenic stimulation of the woman’s immune system, reduced production of protective (blocking) antibodies, and impaired maternal immune tolerance to the fetus.

HLA-B27: Differential Diagnosis of Seronegative Spondyloarthropathies


HLA-B27 is detected in more than 90% of patients with ankylosing spondylitis, which belongs to the group of “seronegative spondyloarthropathies,” whereas its prevalence in the general population is approximately 8–10%. Carriage of HLA-B27 is associated with earlier disease onset, higher risk of extra-articular manifestations, and a more aggressive course.

The absence of rheumatoid factor and antinuclear antibodies in the presence of HLA-B27, combined with characteristic clinical and radiologic findings, allows differentiation of seronegative spondyloarthropathies from rheumatoid arthritis and systemic lupus erythematosus.

HLA-DQA1, HLA-DQB1, and HLA-DRB1: Significance in Transplantation, Reproductive Medicine, and Autoimmune Diseases


Determination of HLA-DQA1, HLA-DQB1, and HLA-DRB1 alleles is a key step in matching donors and recipients for primary organ transplantation (for example, kidneys). Genotyping at the level of allele groups complies with international standards and is widely used in related and unrelated donor selection.

Specific combinations of HLA-DRB1, HLA-DQA1, and HLA-DQB1 alleles correlate with predisposition to autoimmune disorders. For example, HLA-DRB1 allele variants are associated with the risk of certain autoimmune diseases, including type 1 diabetes mellitus.

HLA typing of married couples is used to identify genetic similarity, since excessive matching of HLA alleles increases the probability that the fetus will inherit two identical copies of the same gene variants (i.e., be HLA homozygous), which may lead to reproductive loss. Differences between spouses in HLA gene variants are one of the important conditions for successful conception and maintenance of pregnancy, making HLA typing a significant tool in the diagnosis of reproductive disorders.

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